ó
np×Qc           @   sé  d  d l  Z d  d l Td  d l m Z e d ƒ Z e j e d d d e j d d ƒZ
 e d	 ƒ Z e j e d d d d d d ƒZ g  Z x e D] Z e j e d
 ƒ q We d ƒ Z e j e d d d d d d ƒZ g  Z x e D] Z e j e d ƒ qå Wd GHg  Z e e
 ƒ Z xP e d e ƒ D]? Z e e e
 e ƒ e ƒ \ Z Z e j e e e e g ƒ q'We d d ƒ Z xA e D]9 Z e j d j g  e D] Z e e ƒ ^ q™ƒ d ƒ q€We j  ƒ  e j  ƒ  e j  ƒ  e j  ƒ  d S(   iÿÿÿÿN(   t   *(   t   pearsonrs   /home/scottn/sixmercounts.csvt	   delimitert   ,t   dtypet   namess%   /home/scottn/runwithgemma/mouse.phenoi   s   /home/scottn/sixmerlist.csvi    s   All files parseds(   /home/scottn/pearsoncorrelmotifcount.csvs   w+s   
(!   t   numpyt   npt   decimalt   scipy.stats.statsR   t   opent   ifilet
   genfromtxtt   int64t   Nonet   countst   mfilet   phent	   phenotypet   xt   appendt   sfilet   sixest   sixmerst   outputt   lent   nt   ranget   it   listt   ct   pt   ofilet   rowt   writet   joint   strt   close(    (    (    s   correlsixmers.pyt   <module>   s6   
$!!7
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