import numpy as np
import string
ifile = open('/home/scottn/refseqandensembl.csv')
datafail = np.genfromtxt(ifile, delimiter=',', dtype=None, names=None)
data = []
for row in datafail:
	data.append(list(row))
ffile = open('/home/scottn/fourmerlist.txt')
fourers = np.genfromtxt(ffile, delimiter='\n', dtype=None, names=None)
output = []
n = len(data)
#n = 50
for i in range(n):
	tlist = []
	for item in fourmers:
		tlist.append(string.count(data[i][4], item))
	output.append(tlist)
ofile = open('/home/scottn/fourmercountantisense.txt', 'w+')
for row in output:
	ofile.write('\t'.join([str(x) for x in row])+'\n')
ofile.close()
ifile.close()
ffile.close()