import numpy as np
ifile = open('/home/scottn/sixmerbin.csv')
data = np.genfromtxt(ifile, delimiter=',', dtype=None, names=None)#.tolist()
sixmerid = open('/home/scottn/sixmerlist.csv')
sixmerstemp = np.genfromtxt(sixmerid, delimiter=',', dtype=None, names=None)#.tolist()
sixmers = []
# for row in sixmerstemp:
	# tlist = []
	# tlist.append(sixmerstemp[0]+sixmerstemp[1]+sixmerstemp[2]+sixmerstemp[3]+sixmerstemp[4]+sixmerstemp[5])
	# tlist.append(sixmerstemp[6]+sixmerstemp[7])
	# tlist.append(sixmerstemp[8]+sixmerstemp[9])
	# sixmers.append(tlist)
ofile = open('/home/scottn/runwithgemma/mouse.geno', 'w+')
output = np.concatenate((sixmers, data),1).tolist()
# output = []
# for i in range(0,4096):
	# tlist = sixmers[i] + data[i]
	# output.append(tlist)
#print(output[1][1])
for row in output:
	ofile.write(','.join([str(x) for x in row])+'\n')
ofile.close()