import numpy as np
ifile = open('/home/scottn/mouse.ped.csv')
data = np.genfromtxt(ifile, delimiter=',', dtype=None, names=None)
sixmerid = open('/home/scottn/sixmerlist.csv')
sixmers = np.genfromtxt(sixmerid, delimiter=',', dtype=None, names=None)
n = len(sixmers)
map = np.zeros(shape = (n,4), dtype=np.int).tolist()
for i in range(0,n):
	map[i][1] = sixmers[i][0]
ofile = open('/home/scottn/plink/mouse.map', 'w+')
for row in map:
	ofile.write('\t'.join([str(x) for x in row])+'\n')