
VQc           @   s  d  d l  Z e d  Z e j e d d d d d d j   Z e d  Z e j e d d d d d d j   Z	 g  Z
 d	 Z x e	 D] Z e e e  Z x= e D]5 Z e d
 k r e d d g Z q e d d g Z q Wx* e e  d d k re d	 d	 g Z q We
 j e  e d Z q We d d  Z xA e
 D]9 Z e j d j g  e D] Z e e  ^ qR d  q9We j   d S(   iNs   /home/scottn/mouse.ped.csvt	   delimitert   ,t   dtypet   namess%   /home/scottn/sixmerbininantisense.txts   	i    i   t   Gt   Ai   iF  i   s&   /home/scottn/plink/mouse.antisense.peds   w+s   
iT  (   t   numpyt   npt   opent   ifilet
   genfromtxtt   Nonet   tolistt   datat   sixmeridt
   sixmergenot   sixmerst   it   rowt   listt   temprowt   itemt   lent   appendt   ofilet   writet   joint   xt   strt   close(    (    (    s   pedgenerate.pyt   <module>   s(   ''7