import numpy as np
ifile = open('/home/scottn/refseqandensembl.csv')
data = np.genfromtxt(ifile, delimiter=',', dtype=None, names=None)
pheno = open('/home/scottn/mouse/microarray/cd4_microarray.ensembl')
phenotype = np.genfromtxt(pheno, delimiter=',', dtype=None, names=None)
ofile = open('/home/scottn/mouse.pheno', 'w+')
output = []
def column(array, i):
	return [row[i] for row in array]
ref = column(data, 2)
for item in ref:
	for row in phenotype:
		if item in row:
			output.append(row)
			break
for row in output:
	ofile.write(','.join([str(x) for x in row])+'\n')
ofile.close()