ó
ÓÉæQc           @   s]   d  d l  Z d  d l m Z d  d l m Z d d d d d e d „ Z d	 d d d
 „ Z	 d S(   iÿÿÿÿN(   t   pearsonr(   t   norms   /home/scottn/sixmercounts.csvs%   /home/scottn/runwithgemma/mouse.phenos   /home/scottn/sixmerlist.csvgš™™™™™¹?c      	   C   sj  d | k  o d k  n s+ t  d ƒ ‚ n  d GHt |  ƒ } t | ƒ } t j | d d  d t j d d  ƒ} t j | d d d d  d d  ƒ}	 g  }
 t | ƒ } t j | d d	 d d
 d d  ƒ} x |	 D] } |
 j | d ƒ qÇ Wd GHg  } t | ƒ } g  } xPt d | ƒ D]?} g  } g  } | d  k r•t j	 | d  d  … | f d t j ƒ} t j
 | d  d  … | f d t j ƒ} t j | | | ƒ } n  | j | ƒ x^ t d t | ƒ ƒ D]G } | | | f | k r¸| j | | | f ƒ | j |
 | ƒ q¸q¸Wt | | ƒ \ } } | j | | | | g ƒ y | d Wn qXd  } qW| rb| | f S| Sd  S(   Ni    i   s,   Percentile must be strictly between 0 and 1.s   Reading files...t	   delimitert   dtypet   namest   ,s   
s   |S6s   File read complete!(   t
   ValueErrort   opent   npt
   genfromtxtt   Nonet   float64t   appendt   lent   ranget   meant   stdR   t   ppfR    (   t   countfst   phenofst   headerfst	   thresholdt   pctilet   includethresholdst	   countfilet	   phenofilet   countst	   phenofailt   phenost
   headerfilet   headerst   rowt   outputt   nt   threshest   jt   trunkt   skunkt   mut   sxt   it   ct   p(    (    s   restrcorrel.pyt   thresholdcompare   sL    $!!((

s   /home/scottn/sixmersbin.csvc         C   ss  d GHt  |  ƒ } t  | ƒ } t j | d d d t j d d  ƒ} t j | d d d d  d d  ƒ} g  } t  | ƒ } t j | d d d d d d  ƒ}	 x | D] }
 | j |
 d ƒ qœ Wg  } d	 GHt |	 ƒ } xù t d
 | ƒ D]è } g  } g  } xX t d
 t | ƒ ƒ D]A } | | | f d
 k r6| j | | ƒ q| j | | ƒ qW| g  k r`d
 } n t j | d t j ƒ} | g  k rd
 } n t j | d t j ƒ} | j |	 | | | | | g ƒ qÞ Wg  } x | D] }
 | j |
 d ƒ q×Wt j	 | d t j ƒ} xb | D]Z }
 |
 d d
 k rK|
 j t
 j |
 d d
 | ƒ ƒ q|
 j t
 j |
 d d
 | ƒ ƒ qW| S(   Ns   Reading files...R   R   R   R   s   
s   |S6i   s   File read complete!i    i   (   R   R   R	   R   R
   R   R   R   R   R   R   t   cdf(   t   binfsR   R   t   binfileR   t   binsR   R   R   R   R   R    R!   R#   R$   R%   R(   t   mu1t   mu2t   diffsR'   (    (    s   restrcorrel.pyt   binarycompare@   sH    
$!!		%$$(
   t   numpyR   t   scipy.stats.statsR    t   scipy.statsR   R
   t   TrueR+   R3   (    (    (    s   restrcorrel.pyt   <module>   s   <