import numpy as np
ifile = open('/home/scottn/sixmercountinantisense.txt')
input = np.genfromtxt(ifile, delimiter='\t', names=None, dtype=None)
output = input
n = len(output)
m = len(output[0])
for i in range(0,n):
	for k in range(0,m):
		if output[i,k] != 0:
			output[i,k] = 2
ofile = open('/home/scottn/sixmerbininantisense.txt', 'w+')
for row in output:
	ofile.write('\t'.join([str(x) for x in row])+'\n')
ofile.close()
ifile.close()