Index of /pre2008/reu/2013/scottn/mouse
Name
Last modified
Size
Description
Parent Directory
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aurandls/
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binarycompareantisense.txt
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176K
bincorrelantisense.txt
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162K
binpearson.alpha.05.corr
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1.0K
binpearson.alpha.05.uncor
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63K
binpearson.sort.txt
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binpearson.txt
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156K
combined-and-aligned.txt
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57M
correlsixmers.py
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961
correlsixmers.pyc
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1.2K
cronput.txt
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6.3G
csv2tsv.py
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309
csv2tsv.pyc
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613
dimercount.csv
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1.8M
dimercount.py
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649
dimercount.pyc
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965
dimercountantisense.txt
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866K
dimerlist.txt
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48
dimermatrix.py
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631
dimermatrix.pyc
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890
examples.desktop
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8.2K
findmatches.py
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344
findmatches.pyc
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600
fourmercount.py
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656
fourmerlist.py
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291
fourmerlist.pyc
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572
fourmerlist.txt
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1.3K
fourmermatrix.py
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635
gemma/
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genocreate.py
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886
genocreate.pyc
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727
headers.txt
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28K
id_rsa.pub
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398
important.py
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271
important.pyc
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468
kinshipmatrix.py
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473
kinshipmatrix.pyc
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779
kinshipmatrixwithnegativecorr.py
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612
kinshipmatrixwithnegativecorr.pyc
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922
kinshipsixmercorr.txt
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0
linreg.py
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5.0K
linreg.pyc
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7.1K
mapgenerate.py
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496
mapgenerate.pyc
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804
matriximport.py
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140
matriximport.pyc
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319
meandifference.alpha.05.corr
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1.2K
meandifference.alpha.05.uncor
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22K
meandifference.txt
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meandifference2.txt
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287K
meandifference2.txt.corr
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2.2K
meandifference2.txt.uncor
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62K
meandiffsantisense.txt
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291K
missing-row.txt
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motifpresence.py
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566
motifpresence.pyc
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835
mouse-autothreshold.alpha.05.corr
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0
mouse-autothreshold.alpha.05.uncor
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15K
mouse-autothreshold.alpha.10.corr
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82
mouse-autothreshold.alpha.10.uncor
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98K
mouse-autothreshold.txt
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154K
mouse-data-no-repeats.csv
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42M
mouse.fa
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3.9M
mouse.map
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283M
mouse.ped.csv
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850K
mouse/
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mouse_ensembl_refseq
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3.7M
mouse_ensembl_refseq.csv
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3.7M
mouse_ensembl_refseq.txt
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1.2M
mousejul8correllmm1.alpha.0001.corr
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mousejul8correllmm1.alpha.0001.uncor
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559
mousejul8correllmm1.alpha.0005.corr
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mousejul8correllmm1.alpha.0005.uncor
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2.0K
mousejul8correllmm1.alpha.001.corr
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mousejul8correllmm1.alpha.001.uncor
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3.0K
mousejul8correllmm1.alpha.01.corr
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mousejul8correllmm1.alpha.01.uncor
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15K
mousejul8correllmm1.alpha.05.corr
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0
mousejul8correllmm1.alpha.05.uncor
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39K
mousejul8correllmm1.alpha.10.corr
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188
mousejul8correllmm1.alpha.10.uncor
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60K
nonzero.txt
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156K
nonzerocorrelantisense.txt
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156K
nonzerosixmercorrel.alpha.0001.corr
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6.6K
nonzerosixmercorrel.alpha.0001.uncor
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24K
nonzerosixmercorrel.alpha.001.corr
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9.3K
nonzerosixmercorrel.alpha.001.uncor
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35K
nonzerosixmercorrel.alpha.01.corr
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14K
nonzerosixmercorrel.alpha.01.uncor
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52K
nonzerosixmercorrel.alpha.05.corr
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17K
nonzerosixmercorrel.alpha.05.uncor
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71K
nonzerosixmercorrel.txt
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156K
output.txt
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6.3G
output1.txt
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6.3G
output2.txt
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0
outputfinal.txt
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pcmotifcount.alpha.01.corr
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0
pcmotifcount.alpha.01.uncor
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33K
pcmotifcount.alpha.05.corr
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0
pcmotifcount.alpha.05.uncor
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77K
pcmotifcount.alpha.10.corr
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123
pcmotifcount.alpha.10.uncor
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99K
pearsoncorrelmotifcount.alpha.0001.corr
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0
pearsoncorrelmotifcount.alpha.0001.uncor
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pearsoncorrelmotifcount.alpha.001.corr
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pearsoncorrelmotifcount.alpha.001.uncor
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5.7K
pearsoncorrelmotifcount.alpha.01.corr
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pearsoncorrelmotifcount.alpha.01.uncor
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33K
pearsoncorrelmotifcount.alpha.05.corr
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pearsoncorrelmotifcount.alpha.05.uncor
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77K
pearsoncorrelmotifcount.alpha.10.corr
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123
pearsoncorrelmotifcount.alpha.10.uncor
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99K
pearsoncorrelmotifcount.csv
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162K
pearsoncorrelmotifcount.sort.txt
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0
pearsoncorrelmotifcount.txt
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162K
pedgenerate.py
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728
pedgenerate.pyc
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1.0K
phenocreate.py
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603
phenocreate.pyc
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943
philcommand.txt
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2.2K
plink/
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printest.py
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111
printest.pyc
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309
public_html/
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pvalanalysis.py
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796
pvalanalysis.pyc
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1.2K
pythout.csv
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2.4G
pythoutdimer.csv
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2.2G
pythoutdimer.tsv
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2.2G
pythoutdimerantisense.csv
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0
pythoutdimerantisense.txt
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2.4G
pythoutsixmer.csv
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1.8G
refseq-3primeutr.txt
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3.6M
refseqandensembl.csv
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42M
restrcorrel.py
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4.6K
restrcorrel.pyc
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2.8K
results.txt
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18M
rmchars.sh
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246
runwithgemma/
2013-07-17 19:27
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scottn.cron
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53
scottn2.cron
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41
searchresults.txt
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175K
sixmerbin.csv
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141M
sixmerbin.py
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451
sixmerbin.pyc
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752
sixmerbininantisense.csv
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283M
sixmerbininantisense.txt
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283M
sixmercorrel.bakmat
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94M
sixmercorrelantisense.py
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1.0K
sixmercorrelbin.txt
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60K
sixmercountinantisense.txt
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283M
sixmercounts.csv
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141M
sixmercounts.py
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701
sixmercounts.pyc
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1.0K
sixmerkinshipforrealthistime.py
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504
sixmerkinshipforrealthistime.pyc
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836
sixmerlist.csv
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52K
sorting.py
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1.0K
sorting.pyc
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1.4K
table-lookup-test.xlsm
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1.3M
tempwrite.txt
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16K
test.sh
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test.txt
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56
tetramercount.csv
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18M
thresholdis1.alpha.05.corr
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1.1K
thresholdis1.alpha.05.uncor
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18K
thresholdis1.txt
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151K
thresholdis2.txt
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139K
thresholdis10pearson.alpha.001.corr
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0
thresholdis10pearson.alpha.001.uncor
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1.1K
thresholdis10pearson.alpha.05.corr
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0
thresholdis10pearson.alpha.05.uncor
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29K
thresholdis10pearson.alpha.10.corr
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41
thresholdis10pearson.alpha.10.uncor
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48K
thresholdis10pearson.txt
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154K
trial.awk
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104
trimercount.csv
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5.6M
truncatedcorrelation.txt
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154K
truncatedcorrelation.txt.corr
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0
truncatedcorrelation.txt.uncor
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1.0K
weavile.py
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18M
weavile.pyc
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14M
~5D5D
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141M